Index

_

_process_sims() (in module flexsweep.fv)

_process_vcf() (in module flexsweep.fv)

A

achaz_t() (in module flexsweep.fv) achaz_y() (in module flexsweep.fv)

achaz_y_star() (in module flexsweep.fv) available_stats() (in module flexsweep.scan)

C

calculate_stats_simulations() (in module flexsweep.fv) calculate_stats_vcf_flat() (in module flexsweep.fv) check_inputs() (flexsweep.Simulator method) CNN (class in flexsweep.cnn)

compute_r2_matrix_upper() (in module flexsweep.fv) compute_t_m() (in module flexsweep.fv) count_sweeps_multipop() (in module flexsweep.enrichment) count_sweeps_singlepop() (in module flexsweep.enrichment) create_params() (flexsweep.Simulator method)

D

Data (class in flexsweep.data)

dind_high_low() (in module flexsweep.fv) dind_high_low_from_pairs() (in module flexsweep.fv)

E

empirical_pvalues() (in module flexsweep.scan)

estimate_fdr() (in module flexsweep.enrichment)

F

fast_sq_freq_pairs() (in module flexsweep.fv) fay_wu_h_norm() (in module flexsweep.fv) fuli_d() (in module flexsweep.fv)

fuli_d_star() (in module flexsweep.fv) fuli_f() (in module flexsweep.fv) fuli_f_star() (in module flexsweep.fv)

G

garud_h() (in module flexsweep.fv)

genome_reader() (flexsweep.data.Data method) get_cm() (flexsweep.data.Data method)

H

h12_enard() (in module flexsweep.fv) haf_top() (in module flexsweep.fv) hapdaf_from_pairs() (in module flexsweep.fv)

hapdaf_o() (in module flexsweep.fv) hapdaf_s() (in module flexsweep.fv) hscan() (in module flexsweep.fv)

I

ihs_ihh() (in module flexsweep.fv)

isafe() (in module flexsweep.fv)

L

Lambda_statistic_fast() (in module flexsweep.fv)

LASSI_spectrum_and_Kspectrum() (in module flexsweep.fv) Ld() (in module flexsweep.fv)

M

mu_stat() (in module flexsweep.fv)

N

ncd1() (in module flexsweep.fv) neutral() (flexsweep.Simulator method) neutrality_stats() (in module flexsweep.fv)

normalize_cut_raw() (in module flexsweep.fv) normalize_neutral() (in module flexsweep.fv) normalize_stats() (in module flexsweep.fv)

O

omega_linear_correct() (in module flexsweep.fv)

P

plot_diversity() (in module flexsweep.utils) plot_fv_pca() (in module flexsweep.utils) plot_manhattan() (in module flexsweep.utils)

plot_scan() (in module flexsweep.utils) plot_stat_distributions() (in module flexsweep.utils) plot_sweep_density() (in module flexsweep.utils)

R

r2() (in module flexsweep.fv) random_distribution() (flexsweep.Simulator method) rank_probabilities() (in module flexsweep.utils) read_demes() (flexsweep.Simulator method) read_simulations() (flexsweep.data.Data method) read_vcf() (flexsweep.data.Data method)

resolve_stats() (in module flexsweep.fv) run_beta_window() (in module flexsweep.fv) run_bootstrap_nomatchomega() (in module flexsweep.enrichment) run_enrichment() (in module flexsweep.enrichment) run_isafe() (in module flexsweep.fv) run_lassip() (in module flexsweep.fv) run_raisd() (in module flexsweep.fv)

S

s_ratio() (in module flexsweep.fv) s_ratio_from_pairs() (in module flexsweep.fv) scan() (in module flexsweep.scan) sfs_nb() (in module flexsweep.fv) simulate() (flexsweep.Simulator method)

simulate_batch() (flexsweep.Simulator method) Simulator (class in flexsweep) stat_params() (in module flexsweep.scan) summary_statistics() (in module flexsweep.fv) sweep() (flexsweep.Simulator method)

T

T_m_statistic_fast() (in module flexsweep.fv) tajima_d() (in module flexsweep.fv)

theta_pi() (in module flexsweep.fv) theta_watterson() (in module flexsweep.fv)

Z

zeng_e() (in module flexsweep.fv)